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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194417625_194449517_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194417625 - 194449517
Intron Length:
31893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
AASENYMKLKRLQIEESSKP
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.3
0.77
0.9
86.8
24.4
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
GTF2F2
Ensembl Gene ID:
ENSAPLG00000004535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004676
194403874 - 194485651
81778