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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194470177_194478142_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194470177 - 194478142
Intron Length:
7966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTGTTCATTT
Flanking Amino Acid:
TLTVFTESSAEGQSDEKSES
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
48.7
-0
2.1
75.55
42.1

Associated Gene:

Gene:
GTF2F2
Ensembl Gene ID:
ENSAPLG00000004535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004676
194403874 - 194485651
81778