About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194492633_194492841_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
194492633 - 194492841
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTTTTTCA
5'SS Class:
weak_major
3'SS Sequence:
CTTTCTTGCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACAC
Flanking Amino Acid:
KLTSADSVSWPVPRQSWMTE
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.2
55.2
38.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
67.2
0.39
1.1
67
38.3
Minor 5ss
42.6
-0.8
2.3
43.5
43.7
Minor BPS
55.7
0.16
1.7
67.55
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004532
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004647
194488950 - 194496057
7108