Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194492999_194493572_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

194492999 - 194493572

Intron Length:

574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTATTTATT

5'SS Class:

weak_major

3'SS Sequence:

AACAGATAGTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTATTTTTAGAA

Flanking Amino Acid:

PADRERKAKVRRRPPLSMDN

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.7

0.28

1.1

40.1

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

40.6

-0.5

1.7

36.6

43.6

Minor 5ss

49.1

-0.1

2.5

65.1

40.1

Minor BPS

57.1

0.22

1.6

68.99

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004647

194488950 - 194496057

7108