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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194502150_194503849_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194502150 - 194503849
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCCGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CCGTTTTTACAG
Flanking Amino Acid:
RLAEQVTSYNESKRSESLLD
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
80.7
0.69
0.8
74.5
33.8
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
45
-0.5
1.7
42.73
43.4

Associated Gene:

Gene:
GPALPP1
Ensembl Gene ID:
ENSAPLG00000004496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004625
194501931 - 194510062
8132