Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194503946_194504506_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194503946 - 194504506

Intron Length:

561

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TTGCACTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTCAT

U12 Branch Point Sequence:

TAGTCATTCACT

Flanking Amino Acid:

TPADRERKAKEREETKKSTS

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

80.5

33.9

Major BPS

0.67

1.1

77.7

37.1

Major PPT

0.52

0.9

69.9

36.2

Minor 5ss

36.6

-1.5

2.9

49.5

46.5

Minor BPS

58.3

0.34

2.1

78.47

43.4

Associated Gene:

Gene:

GPALPP1

Ensembl Gene ID:

ENSAPLG00000004496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004625

194501931 - 194510062

8132