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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194511781_194512405_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194511781 - 194512405
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGATGAG
5'SS Class:
major
3'SS Sequence:
CTTTATCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TTCCCTTTATCT
Flanking Amino Acid:
YDEHISQHTQCTEEGCNFNA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.2
57.7
41.5
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
86.5
0.82
0.8
80.9
30.7
Minor 5ss
26.3
-2.7
3.2
31.3
43
Minor BPS
65.9
0.58
1.6
81.06
40.9

Associated Gene:

Gene:
NUFIP1
Ensembl Gene ID:
ENSAPLG00000004973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005134
194510256 - 194531315
21060