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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194519016_194522514_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194519016 - 194522514
Intron Length:
3499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTTCTGTGAACT
Flanking Amino Acid:
RGEVLTTPQFGKMKGMWKAE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
55.7
0.26
2.2
82.07
39.1

Associated Gene:

Gene:
NUFIP1
Ensembl Gene ID:
ENSAPLG00000004973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005134
194510256 - 194531315
21060