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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194522778_194526476_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
194522778 - 194526476
Intron Length:
3699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
GAACTCAGAAAA
Flanking Amino Acid:
PLSLLANSDVESDKDEEAAE
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
79.1
0.65
0.7
73.6
24.6
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
42.3
-0.5
1.6
47.54
34.3

Associated Gene:

Gene:
NUFIP1
Ensembl Gene ID:
ENSAPLG00000004973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005134
194510256 - 194531315
21060