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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194528369_194530979_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194528369 - 194530979
Intron Length:
2611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTGTTACTT
Flanking Amino Acid:
PKRRPTLLEMLLAQDIRHER
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.5
0.75
0.9
77.3
36.6
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
49.7
0.05
2.3
74.4
43.5

Associated Gene:

Gene:
NUFIP1
Ensembl Gene ID:
ENSAPLG00000004973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005134
194510256 - 194531315
21060