Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194575164_194575872_F

Intron Information:

Intron Rank:

148814

Intron Class:

major

Intron Phase:

Intron Coordinates:

194575164 - 194575872

Intron Length:

709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTCTTTGTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.1

38.4

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

0.76

0.8

78.2

34.9

Minor 5ss

33.3

-1.9

2.8

45.7

Minor BPS

46.1

-0.2

2.3

69.97

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038369

194574508 - 194583110

8603