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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194639106_194662858_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194639106 - 194662858
Intron Length:
23753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
AATATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AATATTTCAACA
Flanking Amino Acid:
TTPLVDGEDERYRLTVKHCT
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
68.9
0.42
1
63.2
42
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
54.6
0.14
1.5
63.76
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020430
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026781
194636275 - 194664673
28399