About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194639106_194666839_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
194639106 - 194666839
Intron Length:
27734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATAGATG
Flanking Amino Acid:
TTPLVDGEDERFCVGSLSPL
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
48.2
-0.2
2
59.18
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020430
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028953
194636275 - 194669492
33218
ENSAPLT00000028012
194636275 - 194668403
32129