Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194639106_194743040_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

194639106 - 194743040

Intron Length:

103935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCCAACAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TAGTCCTAAAAA

Flanking Amino Acid:

TTPLVDGEDERFQCDFPWIQ

Intron Amino Acid Position:

947

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.1

39.5

Major BPS

79.2

0.73

75.3

39.4

Major PPT

61.8

0.27

1.1

62.2

Minor 5ss

33.4

-1.9

3.4

48.4

47.3

Minor BPS

60.8

0.34

1.8

69.9

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020430

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044366

194636266 - 194743542

107277