Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194666936_194667403_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

194666936 - 194667403

Intron Length:

468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGATTTCA

5'SS Class:

strong_major

3'SS Sequence:

GATCGTTTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

GTGCTTCTAATT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

75.6

29.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

73.1

0.52

0.9

69.7

41.2

Minor 5ss

35.1

-1.7

2.7

42.1

44.5

Minor BPS

49.6

0.05

1.6

66.17

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020430

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028012

194636275 - 194668403

32129