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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194666936_194669231_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
194666936 - 194669231
Intron Length:
2296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACCAA
U12 Branch Point Sequence:
AAGTTACCAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
75.6
29.2
Major BPS
56.4
0.16
1.3
67.1
39.2
Major PPT
79
0.65
0.7
69.7
31.1
Minor 5ss
35.1
-1.7
2.7
42.1
44.5
Minor BPS
44
-0.3
2
61.9
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020430
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028953
194636275 - 194669492
33218