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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194836606_194839128_F

Intron Information:

Intron Rank:
129966
Intron Class:
major
Intron Phase:
Intron Coordinates:
194836606 - 194839128
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
52
0.14
2
77.17
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031914
194836188 - 194840896
4709