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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194941689_194945497_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
194941689 - 194945497
Intron Length:
3809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATCA
Flanking Amino Acid:
MHAKLKKEIEVQNKRYDAIL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.9
81.5
34.7
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
56.9
0.21
1.6
66.97
40

Associated Gene:

Gene:
CCDC122
Ensembl Gene ID:
ENSAPLG00000005173
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005340
194937845 - 194945650
7806