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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_194972758_194985198_F

Intron Information:

Intron Rank:
150257
Intron Class:
major
Intron Phase:
Intron Coordinates:
194972758 - 194985198
Intron Length:
12441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTACG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAT
U12 Branch Point Sequence:
ACTACCAGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
66.6
44.7
Major BPS
60.8
0.27
1.2
51.8
43.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
35.1
-1.7
2.9
43.8
43.5
Minor BPS
48.9
-0
1.8
60.69
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030761
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032892
194971122 - 194985272
14151