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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195003791_195043941_F

Intron Information:

Intron Rank:
150261
Intron Class:
major
Intron Phase:
Intron Coordinates:
195003791 - 195043941
Intron Length:
40151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATATATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
49.4
0.04
1.8
70.81
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030761
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043989
194971122 - 195044015
72894