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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195044016_195082701_F

Intron Information:

Intron Rank:
150259
Intron Class:
major
Intron Phase:
Intron Coordinates:
195044016 - 195082701
Intron Length:
38686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
CTAGGTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75.9
33.3
Major BPS
70
0.5
1
67
39.8
Major PPT
82.2
0.73
0.8
76.7
31.6
Minor 5ss
42.5
-0.8
3.1
54.4
45.2
Minor BPS
55.5
0.25
1.9
71.91
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030761
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036059
194971122 - 195082779
111658