Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195047758_195047978_R

Intron Information:

Intron Rank:

143772

Intron Class:

major

Intron Phase:

Intron Coordinates:

195047758 - 195047978

Intron Length:

221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

ACTGGCTGATGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

83.7

0.76

0.8

76.2

37.8

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

37.7

-0.9

2.2

44.77

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029280

195045291 - 195048149

2859