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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195118590_195124809_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195118590 - 195124809
Intron Length:
6220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACGCTATTAATT
Flanking Amino Acid:
LALPLSMTFTGMKFLEDCPV
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
78
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81
0.7
0.9
78.5
35.1
Minor 5ss
33.6
-1.9
2.9
41.7
44.7
Minor BPS
51.8
0.13
1.6
64.34
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029610
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028364
195112827 - 195132326
19500