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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195124870_195129102_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195124870 - 195129102
Intron Length:
4233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TTTCCATTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTCACA
Flanking Amino Acid:
HRCISKIASNACFIFGLLAF
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
62.2
43.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82
0.72
0.8
76.4
31
Minor 5ss
30.2
-2.3
3.2
35.3
42.3
Minor BPS
60.1
0.31
2
78.35
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029610
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028364
195112827 - 195132326
19500