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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195161329_195162287_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195161329 - 195162287
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGATATTAAAT
Flanking Amino Acid:
SVVLSSLQLKCYKKPDTESY
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
73.6
39.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.2
0.7
0.7
80.6
24.7
Minor 5ss
21.9
-3.2
3.8
28.2
38.6
Minor BPS
56
0.27
1.7
75.05
41.2

Associated Gene:

Gene:
ATP7B
Ensembl Gene ID:
ENSAPLG00000006302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041411
195161064 - 195187116
26053
ENSAPLT00000031557
195161064 - 195187116
26053
ENSAPLT00000019335
195161064 - 195187116
26053
ENSAPLT00000006600
195161064 - 195187116
26053