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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195174041_195176127_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195174041 - 195176127
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTCC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTATTCTTACTG
Flanking Amino Acid:
SSMADESLITGEAMPVTKKP
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
70.4
34.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
41.7
-0.9
2.7
51
39.7
Minor BPS
55.7
0.04
1.7
59.08
43.4

Associated Gene:

Gene:
ATP7B
Ensembl Gene ID:
ENSAPLG00000006302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041411
195161064 - 195187116
26053
ENSAPLT00000031557
195161064 - 195187116
26053
ENSAPLT00000019335
195161064 - 195187116
26053
ENSAPLT00000006600
195161064 - 195187116
26053