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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195176462_195177464_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195176462 - 195177464
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATGTCTTAATC
Flanking Amino Acid:
LFFVLCTFVQSKTSEALAKL
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.7
0.85
0.6
87.2
23.3
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
71.4
0.65
1.3
74.79
36.1

Associated Gene:

Gene:
ATP7B
Ensembl Gene ID:
ENSAPLG00000006302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019335
195161064 - 195187116
26053