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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195177640_195178001_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195177640 - 195178001
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
ACAGCTTCTACT
Flanking Amino Acid:
HNLDHKKEIQQWRKSFLCSL
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
58.8
0.22
1.6
75
40
Major PPT
87
0.83
0.7
84.6
29.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
45.4
-0.2
1.9
58.83
44.6

Associated Gene:

Gene:
ATP7B
Ensembl Gene ID:
ENSAPLG00000006302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041411
195161064 - 195187116
26053
ENSAPLT00000031557
195161064 - 195187116
26053
ENSAPLT00000019335
195161064 - 195187116
26053
ENSAPLT00000006600
195161064 - 195187116
26053