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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195180143_195180924_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195180143 - 195180924
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GTGTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTCCTAAAAT
Flanking Amino Acid:
AETEGNVELLITGMTCASCV
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.5
0.75
0.8
81.3
36.4
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
69.4
0.69
1.8
86.3
39.3

Associated Gene:

Gene:
ATP7B
Ensembl Gene ID:
ENSAPLG00000006302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041411
195161064 - 195187116
26053
ENSAPLT00000031557
195161064 - 195187116
26053
ENSAPLT00000019335
195161064 - 195187116
26053
ENSAPLT00000006600
195161064 - 195187116
26053