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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195185215_195186993_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195185215 - 195186993
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAAAGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
PRAGNPRREGALSDTDSPPS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.3
60.9
43.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
20.3
-3.4
3.8
21.7
37.6
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
ATP7B
Ensembl Gene ID:
ENSAPLG00000006302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041411
195161064 - 195187116
26053
ENSAPLT00000031557
195161064 - 195187116
26053
ENSAPLT00000019335
195161064 - 195187116
26053
ENSAPLT00000006600
195161064 - 195187116
26053