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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19519479_19585170_R

Intron Information:

Intron Rank:
152092
Intron Class:
major
Intron Phase:
Intron Coordinates:
19519479 - 19585170
Intron Length:
65692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAAACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTTCCAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.7
32.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
69.1
0.43
1
63
36.4
Minor 5ss
27.8
-2.5
3.3
39.7
46.3
Minor BPS
60.6
0.33
2
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029419
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029464
19518716 - 19586965
68250