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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195204773_195205590_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195204773 - 195205590
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TGACTCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GCTTTCTGACTC
Flanking Amino Acid:
RHKMVAGGTGRLLCSLLVPA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
73.3
0.53
1
69.5
41.4
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
49.3
-0
1.7
59.08
40.5

Associated Gene:

Gene:
ALG11
Ensembl Gene ID:
ENSAPLG00000006293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006515
195204639 - 195208983
4345