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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195224276_195225766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195224276 - 195225766
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTCATTGATTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTGATT
Flanking Amino Acid:
LYELCALKHPFEGSSLHQLV
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
63.8
0.31
1.2
68
41.7
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
75.6
0.89
1.5
92.49
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032983
195223994 - 195226475
2482