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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195225822_195226245_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195225822 - 195226245
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
CTTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCCTGAAAC
Flanking Amino Acid:
ICENRPYNNKTDIWSLGCVL
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
84.1
29.7
Minor 5ss
34.7
-1.7
3
43.9
36.8
Minor BPS
75.6
0.78
1.5
85.18
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032983
195223994 - 195226475
2482