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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195228055_195230046_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195228055 - 195230046
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGAA
5'SS Class:
major
3'SS Sequence:
TCTTTCACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGTCTTTCACC
Flanking Amino Acid:
QHGVLFDEDQILSWFVQISL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
69.8
29.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.3
0.66
0.8
74.2
29.3
Minor 5ss
23.6
-3
3.1
28.7
43.6
Minor BPS
68.6
0.57
1.7
77.71
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035937
195226876 - 195233382
6507