Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195230145_195230791_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

195230145 - 195230791

Intron Length:

647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTACTTT

5'SS Class:

weak_major

3'SS Sequence:

CTTTTCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATAAA

U12 Branch Point Sequence:

AATAAAGGAATA

Flanking Amino Acid:

NIVTFFASLQENNKLYIVME

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.5

0.3

1.2

65.9

40.3

Major BPS

53.1

0.08

1.2

56.3

37.2

Major PPT

90.8

0.92

0.6

88.8

20.5

Minor 5ss

55.6

0.19

2.5

73.9

42.6

Minor BPS

36.9

-1

2.1

47.37

35.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035937

195226876 - 195233382

6507