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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195230889_195232454_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195230889 - 195232454
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AGTTCCTTAATT
Flanking Amino Acid:
CVIKEIDLTKMPVKEKEASQ
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
66.1
0.4
1
73
31.5
Major PPT
78.9
0.65
0.8
74.1
36
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
85.6
1.19
0.9
91.49
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020511
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035937
195226876 - 195233382
6507