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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195234496_195235420_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
195234496 - 195235420
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
AATCTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTTTTTGAAAT
Flanking Amino Acid:
RLEPRSDEDDTDFEEDDPDW
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
64.2
41.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73.5
0.53
0.9
70.2
40.4
Minor 5ss
42
-0.9
2.7
50
39.6
Minor BPS
57
0.3
1.5
71.88
39.1

Associated Gene:

Gene:
NEK3
Ensembl Gene ID:
ENSAPLG00000005738
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005970
195234298 - 195247869
13572