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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195240338_195242024_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195240338 - 195242024
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
ATTTTTAACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACG
Flanking Amino Acid:
LYELCTLTHPFQAKSWKHLI
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.6
0.58
0.9
71.3
38
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
76.2
0.68
1.2
75.56
36.3

Associated Gene:

Gene:
NEK3
Ensembl Gene ID:
ENSAPLG00000005738
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005970
195234298 - 195247869
13572