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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195243747_195245235_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195243747 - 195245235
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TCTCCATTACTC
Flanking Amino Acid:
QRGKLFPEDMILHWFVQMCL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
86.8
0.83
0.7
84.8
29.7
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
50.9
0.01
1.9
64.76
41.1

Associated Gene:

Gene:
NEK3
Ensembl Gene ID:
ENSAPLG00000005738
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005970
195234298 - 195247869
13572