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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195246618_195247015_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
195246618 - 195247015
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTGCCCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.8
81.9
28.9
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
60.2
0.4
1.7
73.02
44.3

Associated Gene:

Gene:
NEK3
Ensembl Gene ID:
ENSAPLG00000005738
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005970
195234298 - 195247869
13572