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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195251226_195251705_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
195251226 - 195251705
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCCATATTT
Flanking Amino Acid:
NTESLIKCEDGSAVIEAQTE
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
85.9
32.8
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
60.5
0.41
1.9
80.67
41.5

Associated Gene:

Gene:
CKAP2
Ensembl Gene ID:
ENSAPLG00000005260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005431
195248745 - 195260824
12080