About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195252473_195253053_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195252473 - 195253053
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTTCAAT
5'SS Class:
major
3'SS Sequence:
ATGTCGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
TTCACTGTGATT
Flanking Amino Acid:
LAECLQLSEQGCEGDKVRAM
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1
68.5
37.6
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
70.5
0.46
0.9
66.9
39.9
Minor 5ss
41.8
-0.9
2.8
57
47.4
Minor BPS
49
0
2
70.89
41

Associated Gene:

Gene:
CKAP2
Ensembl Gene ID:
ENSAPLG00000005260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005431
195248745 - 195260824
12080