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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195255043_195256766_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195255043 - 195256766
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGCTTTTCACT
Flanking Amino Acid:
NLSASPKPEMEDKENANKLS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.2
0.75
0.8
80.9
31
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
51.7
0.13
1.7
69.24
42

Associated Gene:

Gene:
CKAP2
Ensembl Gene ID:
ENSAPLG00000005260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005431
195248745 - 195260824
12080