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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195258582_195260775_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
195258582 - 195260775
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTAAACCCACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAC
Flanking Amino Acid:
PSRRAEPAFREQRRQKVEEY
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58
0.18
1
49.7
39.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
CKAP2
Ensembl Gene ID:
ENSAPLG00000005260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005431
195248745 - 195260824
12080