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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195261182_195261883_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195261182 - 195261883
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGGAG
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTTTTTGACCT
Flanking Amino Acid:
GVRLYDGEEKVKFESGVLLL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1
61.9
38.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
84.5
0.78
0.8
85.1
29.7
Minor 5ss
23.2
-3.1
3.2
28.3
43.9
Minor BPS
56.5
0.28
1.7
76.88
39.8

Associated Gene:

Gene:
VPS36
Ensembl Gene ID:
ENSAPLG00000004957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005150
195261086 - 195277906
16821