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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195261953_195264932_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195261953 - 195264932
Intron Length:
2980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGCATTGATT
Flanking Amino Acid:
RLLWRDQKNHECCIAIPLSQ
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.9
0.56
0.9
67.1
43.6
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
64.7
0.54
1.7
84.15
36.9

Associated Gene:

Gene:
VPS36
Ensembl Gene ID:
ENSAPLG00000004957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005150
195261086 - 195277906
16821