Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195266380_195267770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

195266380 - 195267770

Intron Length:

1391

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TCAATGTTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

CATTCTTCAATG

Flanking Amino Acid:

LSFKEHGQIEFYRRFSEEIT

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

75.5

0.57

68.9

41.6

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

58.3

0.12

1.6

60.42

42.1

Associated Gene:

Gene:

VPS36

Ensembl Gene ID:

ENSAPLG00000004957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005150

195261086 - 195277906

16821