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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195269191_195272287_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195269191 - 195272287
Intron Length:
3097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTTTTCATT
Flanking Amino Acid:
RKETDKNISEAFEDLSKLME
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
52.8
0.17
1.7
72.08
39.9

Associated Gene:

Gene:
VPS36
Ensembl Gene ID:
ENSAPLG00000004957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005150
195261086 - 195277906
16821