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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_195272501_195272889_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
195272501 - 195272889
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
EKQGDITEDETIRFKSYLLS
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.2
0.7
0.9
81.3
36.3
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
VPS36
Ensembl Gene ID:
ENSAPLG00000004957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005150
195261086 - 195277906
16821